PERL COMMANDS FOR RUNNING PATSCAN WITH ACONITASE PATTERN

 

- Running aconitase pattern on the mitochondrial set of sequences:
                    $scan_for_matches aconitasepattern.txt < aconitase.fa

- Running aconitase pattern on the non ires 5' sequences:
                $scan_for_matches aconitasepattern.txt < no_ires_5'.fa

- Running aconitase pattern on the non ires 5' sequences:
                $scan_for_matches aconitasepattern.txt < no_ires_3'.fa