BASE PAIRING IN THE TRAINING SEQUENCES (15 sequences)

( ) = exact matching (A-T, T-A, C-G or G-C)

- = allowed matching (G-T or T-G)

· = C-bulge or loop-bulge

>5HSA001988_HUMAN
GTTCGTCCTCAGTGCAGGGCAAC
(((·(-(((······)))-))))

>5HSA003829_HUMAN
TTGCTTCAACAGTGTTTGGACGG 
-···(-(((······)))-)·-)

>5MMU001248_MOUSE
GTTCGTCCTCAGTGCAGGGCAAC 
(((·(-(((······)))-))))

>5MMU002159_MOUSE
CTGCTTCAACAGTGCTTGAACGG
(···(((((······)))))·))

>5SSA000062_SALMON
TTGCTTCAACAGTGATTGAACGG 
-···(((((······)))))·-)

>5XLA000423_XENOPUS
TTGCTTCAACAGTGTTTGAACGG
-···(((((······)))))·-)

>5AAE000011_MOSQUITO
ACCTTCTGTGCCAGTGTGTATAAAGGT 
(((((·(-(-(······)-)-)))))) 

>5DME001131_FLY
TAATTGCAAACGCAGTGCCGTTTCAATTG
-(((···(((((······)))))·))))-

>5IRI000001_CASTOR
TTTTGCTTCAACAGTGATTGAACGAG 
-(-···(((((······)))))·-)-

>5LST000028_SNAIL
TTGCTGCGTCAGTGAACGTACAG
(···(-(((······)))-)·))

>3HSA033802_1_HUMAN
TTATTTATCAGTGACAGAGTTCACTATAAATGG 
--((((((·(((((······)))))))))))--

>3HSA033802_2_HUMAN
ATAATTATCGGAAGCAGTGCCTTCCATAATTAT 
((((((((·(((((······)))))))))))))

>3HSA033802_3_HUMAN
ACATTATCGGGAGCAGTGTCTTCCATAATGT 
(((((((·((-((······))-)))))))))

>3HSA033802_4_HUMAN
TGTATCGGAGACAGTGATCTCCATATG 
--(((·(((((······))))))))--

>3HSA033802_5_HUMAN
AATTATCGGGAACAGTGTTTCCCATAATT 
((((((·(((((······)))))))))))