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Blastp results for the GenScan sixth gene
Score E
Sequences producing significant alignments: (bits) Valuegi|7657180|ref|NP_055283.1| (NM_014468) VENT-like homeobox ... 242 5e-63
gi|18580086|ref|XP_090393.1| (XM_090393) hypothetical prote... 174 1e-42
gi|18570787|ref|XP_070562.2| (XM_070562) similar to VENT-li... 112 9e-24
gi|7512487|pir||I37555 homeobox - human (fragment) >gi|5349... 83 7e-15
gi|4191276|emb|CAA10306.1| (AJ131095) Xvent-2B protein [Xen... 77 4e-13
gi|1314641|gb|AAC59910.1| (U53529) Vox-15 [Xenopus laevis] 74 4e-12
gi|2134177|pir||S66151 vent-1 protein - African clawed frog... 72 8e-12
gi|5326874|gb|AAD42079.1|AF149307_1 (AF149307) homeodomain ... 72 9e-12
gi|1167986|gb|AAB03566.1| (U43937) Xbr-1a [Xenopus laevis] 71 2e-11
gi|1431631|emb|CAA67354.1| (X98849) VENT-2 transcription fa... 71 2e-11
gi|11065780|gb|AAG28338.1|AF078162_1 (AF078162) Xbr-1a/Xven... 71 2e-11
gi|17486057|ref|XP_066750.1| (XM_066750) similar to VENT-li... 71 2e-11
gi|632047|pir||S43226 homeotic protein PROX2 - Ephydatia fl... 71 2e-11
gi|2331048|gb|AAB71353.1| (AF012925) posterior-ventral 1 tr... 69 8e-11
gi|3184521|gb|AAC18965.1| (U97664) EmH-3 [Ephydatia muelleri] 69 8e-11
gi|18859547|ref|NP_571775.1| (NM_131700) ventral expressed ... 68 2e-10
gi|1403587|emb|CAA67093.1| (X98454) homeobox protein [Xenop... 67 3e-10
gi|17476094|ref|XP_063024.1| (XM_063024) similar to VENT-li... 67 4e-10
gi|1167988|gb|AAB03567.1| (U43938) Xbr-1b [Xenopus laevis] 67 5e-10
gi|4191274|emb|CAA10305.1| (AJ131094) Xvent-1B protein [Xen... 67 5e-10
gi|1314639|gb|AAC59909.1| (U53528) Vox-1 [Xenopus laevis] 66 6e-10
gi|17550916|ref|NP_508814.1| (NM_076413) homeobox protein [... 65 1e-09
gi|17569001|ref|NP_508131.1| (NM_075730) homeobox protein [... 65 1e-09
gi|157018|gb|AAB59219.1| (L06475) brain-specific homeobox p... 65 1e-09
gi|18859551|ref|NP_571773.1| (NM_131698) ventral homeobox [... 65 2e-09
gi|14572594|emb|CAC42831.1| (AJ401088) MOX-2 protein [Gallu... 65 2e-09
gi|109370|pir||S22049 reverse transcriptase-related protein... 65 2e-09
gi|2065054|emb|CAA72693.1| (Y11949) Nkx2-8 [Gallus gallus] 64 2e-09
gi|9937306|gb|AAG02409.1|AF255045_1 (AF255045) vox [Danio r... 64 3e-09
gi|126296|sp|P08548|LIN1_NYCCO LINE-1 REVERSE TRANSCRIPTASE... 64 4e-09
gi|2117156|emb|CAA71665.1| (Y10655) NKX2.8 [Gallus gallus] 64 4e-09
gi|17137534|ref|NP_477350.1| (NM_058002) bsh-P1 [Drosophila... 64 4e-09
gi|17452234|ref|XP_070619.1| (XM_070619) similar to HOMEOBO... 63 5e-09
gi|198646|gb|AAA39398.1| (M29324) ORF2; 5' end undetermined... 63 5e-09
gi|346733|pir||S29902 homeotic protein mox-2 - mouse (fragm... 63 5e-09
gi|16508047|gb|AAL17972.1| (AY053456) pORF2 [Mus musculus d... 62 8e-09
gi|16508044|gb|AAL17970.1| (AY053455) pORF2 [Mus musculus d... 62 8e-09
gi|2120084|pir||I49130 reverse transcriptase - mouse >gi|55... 62 8e-09
gi|18575409|ref|XP_061536.2| (XM_061536) similar to ventral... 62 9e-09
gi|2495318|sp|Q08821|HXA1_XENLA HOMEOBOX PROTEIN HOX-A1 (HO... 62 1e-08
gi|5881591|dbj|BAA84282.1| (AB032248) homeodomain protein [... 62 1e-08
gi|10442648|gb|AAG17404.1|AF281079_1 (AF281079) homeobox pr... 62 1e-08
gi|12018334|ref|NP_072158.1| (NM_022636) ventral anterior h... 62 1e-08
gi|6635939|gb|AAF20017.1|AF117299_1 (AF117299) Vax [Gallus ... 62 1e-08
gi|18308158|gb|AAL67848.1| (AF461700) MOX-2 homeobox [Gallu... 62 1e-08
gi|6678557|ref|NP_033527.1| (NM_009501) ventral anterior ho... 62 1e-08
gi|6518164|dbj|BAA87885.1| (AB018705) ORF2 [Mus musculus] 62 2e-08
gi|7305217|ref|NP_038602.1| (NM_013574) L1 repeat, Tf subfa... 61 2e-08
gi|3599326|gb|AAC72797.1| (AF081106) ORF2 [Mus musculus dom... 61 2e-08
gi|7305221|ref|NP_038604.1| (NM_013576) L1 repeat, Tf subfa... 61 2e-08
gi|2731767|gb|AAC53542.1| (AF016099) endonuclease/reverse t... 61 2e-08
gi|3599320|gb|AAC72793.1| (AF081104) ORF2 [Mus musculus dom... 61 2e-08
gi|7305219|ref|NP_038603.1| (NM_013575) L1 repeat, Tf subfa... 61 2e-08
gi|7305225|ref|NP_038607.1| (NM_013579) L1 repeat, Tf subfa... 61 2e-08
gi|2193870|dbj|BAA20419.1| (D84391) reverse transcriptase [... 61 2e-08
gi|6755957|ref|NP_036042.1| (NM_011912) ventral anterior ho... 61 2e-08
gi|12018336|ref|NP_072159.1| (NM_022637) ventral anterior h... 61 2e-08
gi|87765|pir||JU0033 hypothetical L1 protein (third intron ... 61 2e-08
gi|2130554|gb|AAC60204.1| (U92574) homeobox protein HOXB-1 ... 60 3e-08
gi|11990263|emb|CAC19632.1| (AJ271730) Vax1b protein [Xenop... 60 3e-08
gi|11037117|gb|AAG27485.1|AF194537_1 (AF194537) NAG13 [Homo... 60 3e-08
gi|12643502|sp|Q04787|BSH_DROME BRAIN-SPECIFIC HOMEOBOX PRO... 60 3e-08
gi|2197085|gb|AAD04635.1| (AF003535) ORF2-like protein [Hom... 60 3e-08
gi|16758952|ref|NP_446103.1| (NM_053651) NK2 transcription ... 60 3e-08
gi|14279992|gb|AAK58840.1|AF303217_1 (AF303217) homeobox am... 60 4e-08
gi|17136732|ref|NP_476873.1| (NM_057525) C15-P1 [Drosophila... 60 4e-08
gi|7429144|pir||GNMSLL retrovirus-related reverse transcrip... 60 4e-08
gi|480765|pir||S37252 homeotic protein Hox11 homolog - frui... 60 4e-08
gi|130402|sp|P11369|POL2_MOUSE Retrovirus-related POL polyp... 60 4e-08
gi|1082459|pir||A55641 homeotic protein GAX - human >gi|557... 60 4e-08
gi|17536587|ref|NP_495392.1| (NM_062991) Homeobox [Caenorha... 60 4e-08
gi|399912|sp|Q01703|HMMC_BRARE HOMEOBOX PROTEIN MSH-C >gi|1... 60 5e-08
gi|3445426|emb|CAA07497.1| (AJ007431) homeobox protein [Cup... 60 5e-08
gi|5174549|ref|NP_005915.1| (NM_005924) mesenchyme homeo bo... 60 5e-08
gi|2120082|pir||S23650 retrovirus-related hypothetical prot... 60 5e-08
gi|18568622|ref|XP_088266.1| (XM_088266) mesenchyme homeo b... 60 5e-08
gi|1335205|emb|CAA36480.1| (X52235) ORFII [Homo sapiens] 60 5e-08
gi|547690|sp|Q04281|HX71_XENLA HOMEOBOX PROTEIN XHOX-7.1 >g... 60 5e-08
gi|112262|pir||S21976 probable RNA-directed DNA polymerase ... 60 5e-08
gi|2120083|pir||I38588 reverse transcriptase homolog - huma... 60 5e-08
gi|234375|gb|AAB19630.1| Xhox-7.1 [Xenopus laevis, Peptide,... 60 5e-08
gi|18578579|ref|XP_090123.1| (XM_090123) hypothetical prote... 60 6e-08
gi|2136112|pir||S65824 reverse transcriptase homolog - huma... 60 6e-08
gi|2072977|gb|AAC51279.1| (U93574) putative p150 [Homo sapi... 60 6e-08
gi|2765089|emb|CAA71835.1| (Y10888) Lox7 [Helobdella triser... 60 6e-08
gi|5070622|gb|AAD39215.1|AF148856_2 (AF148856) unknown [Hom... 60 6e-08
gi|2072951|gb|AAC51263.1| (U93564) putative p150 [Homo sapi... 60 6e-08
gi|2072953|gb|AAC51264.1| (U93565) putative p150 [Homo sapi... 60 6e-08
gi|225047|prf||1207289A reverse transcriptase related prote... 60 6e-08
gi|1171000|sp|P39021|MOX2_XENLA HOMEOBOX PROTEIN MOX-2 >gi|... 60 6e-08
gi|539485|pir||S41469 homeotic protein Mox-2 - African claw... 59 7e-08
gi|7305223|ref|NP_038605.1| (NM_013577) L1 repeat, Tf subfa... 59 7e-08
gi|4105141|gb|AAD02272.1| (AF043432) Mox-1 related protein ... 59 7e-08
gi|18859485|ref|NP_571664.1| (NM_131589) thyroid transcript... 59 7e-08
gi|1196433|gb|AAA88038.1| (M22334) unknown protein [Homo sa... 59 7e-08
gi|15824398|gb|AAL09323.1|AF303216_1 (AF303216) homeobox Hx... 59 7e-08
gi|6754680|ref|NP_034921.1| (NM_010791) mesenchyme homeobox... 59 8e-08
gi|14916591|sp|Q9IA19|HXA1_HETFR Homeobox protein Hox-A1 >g... 59 1e-07
gi|3005960|emb|CAA76300.1| (Y16575) NK [Lineus sanguineus] 59 1e-07
gi|104071|pir||A40357 homeotic protein lab1 - African clawe... 59 1e-07
Alignments>gi|7657180|ref|NP_055283.1| (NM_014468) VENT-like homeobox 2; haemopoietic progenitor homeobox
[Homo sapiens]
gi|3941534|gb|AAC82375.1| (AF068006) hemopoietic progenitor homeobox protein VENTX2 [Homo
sapiens]
gi|15077044|gb|AAK83043.1|AF288039_1 (AF288039) hemopoietic progenitor homeobox protein VENTX2 [Homo
sapiens]
Length = 258Score = 242 bits (618), Expect = 5e-63
Identities = 139/188 (73%), Positives = 146/188 (76%), Gaps = 15/188 (7%)Query: 49 EQPSSFGSVDWLCLSSCSGSTHTPRPADVSPGSLPGPGQTFGTREPPQAVSTKEAS-SSN 107
+Q SSFGSVDWL SSCSG THTPRPAD S GSLPGPGQT G REPPQAVS KEA+ SSN
Sbjct: 12 QQLSSFGSVDWLSQSSCSGPTHTPRPADFSLGSLPGPGQTSGAREPPQAVSIKEAAGSSN 71Query: 108 LHAPERTVAGLT--------------FTTEQVRALEGVFRHHQYLGPLERNWLAREMQLS 153
L APERT+AGL+ FT EQVR LEGVF+HHQYL PLER LAREMQLS
Sbjct: 72 LPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLS 131Query: 154 EVQIKTWFQNRRMKHKRQMQDSQLNGPLSGSLHGPPAFHSPSSGLANGLQLLCPWAPLPG 213
EVQIKTWFQNRRMKHKRQMQD QL+ P SGSLH PPAF+S SSGLANGLQLLCPWAPL G
Sbjct: 132 EVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGLQLLCPWAPLSG 191Query: 214 SPGCPLAP 221
L P
Sbjct: 192 PQALMLPP 199
© Porta,M
Ros,S
Sancho,M
Trujillo,E
/ March 2002