Homo Sapiens 3 BAC RP11-758L3 Analysis

HOMO SAPIENS 3 BAC RP11-758L3 ANALYSIS

Results for FLJ22419 mRNA Blast to sequence

BAC RP11-758L3

Sequence 1gi 13375980 Homo sapiens hypothetical protein FLJ22419 (FLJ22419), mRNA Length 1674 (1 .. 1674)

Sequence 2 lcl|AC012089 Length 150429 (1 .. 150429)

Score = 506 bits (263), Expect = e-140
Identities = 269/272 (98%)
Strand = Plus / Plus
Query: 1362 ggtaaaattagtattttcaaaagaaccttcaaagccattggctccacgaattctaccaaa 1421
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94055 ggtaaaattagtattttcaaaagaaccttcaaagccattggctccacgaattctaccaaa 94114

Query: 1422 ccctctagcagctgcagcagccgcagcagcagtggcagtgagttcccccttcagtcttcg 1481
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94115 tcctctagcagctgcagcagccgcagcagcagtggcagtgagttcccccttcagtcttcg 94174

Query: 1482 aactgctccagcagcaacactgttccagacttctgcgcttcctccggcactcctgcggcc 1541
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 94175 aactgctccagcagcaacactgttccagacttccgcgcttcctccggcactcctgcggcc 94234

Query: 1542 agctcccggacccattcggaccgcccacactcctgtgctgtttgctccttactaaattcc 1601
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94235 agctcctggacccattcggaccgcccacactcctgtgctgtttgctccttactaaattcc 94294

Query: 1602 aaataggagtaattgtactgcaataatttttc 1633
             ||||||||||||||||||||||||||||||||
Sbjct: 94295 aaataggagtaattgtactgcaataatttttc 94326

Score = 462 bits (240), Expect = e-127
Identities = 240/240 (100%)
Strand = Plus / Plus
Query: 844   acagacggtactgcagggacaccagcaatatcaacgacgacaactgtggaaatccgcaaa 903
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78296 acagacggtactgcagggacaccagcaatatcaacgacgacaactgtggaaatccgcaaa 78355

Query: 904   agcagtgttatgacaactgagatcacctctaaagtggaaaaaagcccaacgacagccact 963
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78356 agcagtgttatgacaactgagatcacctctaaagtggaaaaaagcccaacgacagccact 78415

Query: 964   ggcaatagctcatgtccttctactgagaccgaggaagaaaaggcaaaacggcttctttac 1023
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78416 ggcaatagctcatgtccttctactgagaccgaggaagaaaaggcaaaacggcttctttac 78475

Query: 1024 tgttcgctatgcaaggttgctgtcaactctgcctcgcagctggaggcgcacaacagtggt 1083
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78476 tgttcgctatgcaaggttgctgtcaactctgcctcgcagctggaggcgcacaacagtggt 78535

Score = 346 bits (180), Expect = 3e-92
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 1081 ggtactaagcacaaaaccatgttagaagcccggaatggaagtggcactatcaaagccttt 1140
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89832 ggtactaagcacaaaaccatgttagaagcccggaatggaagtggcactatcaaagccttt 89891

Query: 1141 cctagggcaggagtgaaaggcaaaggacctgttaataaaggaaacacaggcctccaaaat 1200
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89892 cctagggcaggagtgaaaggcaaaggacctgttaataaaggaaacacaggcctccaaaat 89951

Query: 1201 aaaacatttcactgtgaaatctgtgatgtgcacgtcaactcggaaacgcaacttaaacag 1260
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89952 aaaacatttcactgtgaaatctgtgatgtgcacgtcaactcggaaacgcaacttaaacag 90011

Score = 314 bits (163), Expect = 2e-82
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 685 agccaggctgcggcccactacaaaggcacgaaacatgccaagaagctcaaagcactggaa 744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509 agccaggctgcggcccactacaaaggcacgaaacatgccaagaagctcaaagcactggaa 4568

Query: 745 gccatgaaaaataagcagaaatctgtaactgccaaggacagcgcaaagactaccttcacc 804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4569 gccatgaaaaataagcagaaatctgtaactgccaaggacagcgcaaagactaccttcacc 4628

Query: 805 tccatcactaccaataccatcaataccagctctgacaaaacag 847
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4629 tccatcactaccaataccatcaataccagctctgacaaaacag 4671

Score = 204 bits (106), Expect = 2e-49
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1259 agcacattagcagtagaaggcacaaagacagagctgctgggaagcccccgaaacctaaat 1318
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91437 agcacattagcagtagaaggcacaaagacagagctgctgggaagcccccgaaacctaaat 91496

Query: 1319 acagtccttacaacaaactacagaagacagcacatccactgggggt 1364
             ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91497 acagtccttacaacaaactacagaagacagcacatccactgggggt 91542

BAC RP11-598P2

Sequence 1 gi 13375980 Homo sapiens hypothetical protein FLJ22419 (FLJ22419), mRNA Length 1674 (1 .. 1674)

Sequence 2 gi 16572986 Homo sapiens chromosome 3 clone RP11-598P2, complete sequence Length 149527 (1 .. 149527)

Score = 646 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Minus
Query: 98     ctgcttgtagtactctcagtcctgatgtcacaggcgcggcaaggacatcgcaaggaggag 157
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107625 ctgcttgtagtactctcagtcctgatgtcacaggcgcggcaaggacatcgcaaggaggag 107566

Query: 158    tcggattacagtaaggatgggcagtgcagcaggcagcccgagcgcactctccagccgccg 217
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107565 tcggattacagtaaggatgggcagtgcagcaggcagcccgagcgcactctccagccgccg 107506

Query: 218    gggatcttagccctggaaaggcagcctgcaaggcgctcatcccgcggaggaggcacgctc 277
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107505 gggatcttagccctggaaaggcagcctgcaaggcgctcatcccgcggaggaggcacgctc 107446

Query: 278    tcggcgctcactgctctccacgccggggacatttccaccgaatgtagcatgaaagggctc 337
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107445 tcggcgctcactgctctccacgccggggacatttccaccgaatgtagcatgaaagggctc 107386

Query: 338    tgctctacgtgccagccttgggtgagagctgatgctgaagacaccgcggtgggattccag 397
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107385 tgctctacgtgccagccttgggtgagagctgatgctgaagacaccgcggtgggattccag 107326

Query: 398    ctgtctgattaatgagaaacataatgtattttggtg 433
              ||||||||||||||||||||||||||||||||||||
Sbjct: 107325 ctgtctgattaatgagaaacataatgtattttggtg 107290

Score = 277 bits (144), Expect = 2e-71
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 430   ggtggtacatgccagagtcctgctctcccggcccttgtccgtccaccagcccctcctttg 489
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21426 ggtggtacatgccagagtcctgctctcccggcccttgtccgtccaccagcccctcctttg 21367

Query: 490   caaccatcgctggatattaaaccatttcttccctttcctcttgacactgcagctgcagtc 549
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21366 caaccatcgctggatattaaaccatttcttccctttcctcttgacactgcagctgcagtc 21307

Query: 550   aacctcttccccaatttcaatgcg 573
             ||||||||||||||||||||||||
Sbjct: 21306 aacctcttccccaatttcaatgcg 21283

Score = 135 bits (70), Expect = 2e-28
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 1      aaagcttcccgagagccatggttggtccaggcaggcagtcggagcacctcgtggagcggc 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107722 aaagcttcccgagagccatggttggtccaggcaggcagtcggagcacctcgtggagcggc 107663

Query: 61     tgctaaccca 70
              ||||||||||
Sbjct: 107662 tgctaaccca 107653