RESULTATS DEL PROGRAMA GRAIL AMB LA SEQÜÈNCIA SENSE EMMASCARAR [Start grail2exons_human_1.3] [Seqlen= 148061] [Start exons] [Num= 41] f 2 24564 24693 24516 24731 84.000 excellent f 2 32066 32164 31935 32168 61.000 good f 0 41826 42087 41794 42087 46.000 marginal f 2 42585 42722 42567 42722 57.000 good f 2 47270 47391 47247 47495 72.000 good f 0 47661 47742 47593 47742 54.000 good f 0 50318 50490 50227 50490 61.000 good f 1 66443 66524 66380 66748 75.000 excellent f 2 67809 67994 67809 67994 49.000 marginal f 1 68168 68232 68123 68263 58.000 good f 2 75728 75839 75711 75839 89.000 excellent f 2 75984 76094 75885 76184 93.000 excellent f 2 80738 80835 80340 80942 60.000 good f 0 88735 88856 88714 88860 60.000 good f 2 94456 94627 94398 94631 99.000 excellent f 2 98151 98301 98127 98321 53.000 good f 1 103865 103972 103808 104056 55.000 good f 2 104445 104641 104430 104645 81.000 excellent f 2 104810 104866 104745 104873 74.000 good f 0 114562 114701 114451 114711 82.000 excellent f 0 117979 118059 117946 118269 72.000 good f 1 122108 122230 121883 122242 68.000 good f 2 122298 122405 122268 122405 47.000 marginal f 2 132753 132875 132717 132896 91.000 excellent f 2 134254 134382 134235 134834 60.000 good f 2 147642 147856 147615 147860 58.000 good r 0 141915 142078 141835 142104 68.000 good r 2 141369 141455 141369 141467 94.000 excellent r 1 141150 141211 141143 141250 96.000 excellent r 1 138341 138371 138245 138415 48.000 marginal r 0 128572 128640 128557 128715 51.000 good r 2 126570 126727 126549 126731 75.000 excellent r 2 124761 124835 124755 124868 41.000 marginal r 1 124241 124361 124205 124570 51.000 good r 0 124042 124134 124024 124140 58.000 good r 0 92326 92453 92245 92457 100.000 excellent r 0 63428 63480 63283 63480 74.000 good r 2 49140 49171 49116 49175 56.000 good r 1 32424 32579 32318 32683 87.000 excellent r 1 19472 19543 19343 19543 59.000 good r 1 12395 12526 12386 12526 67.000 good [End exons] [End grail2exons_human_1.3] RESULTATS DEL PROGRAMA GRAIL AMB LA SEQÜÈNCIA EMMASCARADA: [Start grail2exons_human_1.3] [Seqlen= 148061] [Start exons] [Num= 19] f 2 23879 23987 23826 23987 65.000 good f 2 24564 24731 24516 24731 63.000 good f 1 24746 24856 24656 24856 45.000 marginal f 2 47270 47391 47247 47495 72.000 good f 0 47661 47742 47593 47742 54.000 good f 0 50318 50490 50227 50490 61.000 good f 1 62672 62769 62366 62797 61.000 good f 2 75728 75839 75711 75839 87.000 excellent f 1 122108 122242 121883 122242 59.000 good r 1 141150 141211 141143 141250 100.000 excellent r 1 138341 138371 138245 138415 56.000 good r 0 101983 102052 101983 102081 78.000 excellent r 0 92326 92453 92245 92457 100.000 excellent r 1 57917 58005 57875 58009 66.000 good r 2 49140 49171 49116 49175 56.000 good r 0 43519 43605 43336 43605 65.000 good r 1 32516 32579 32318 32683 70.000 good r 1 14573 14605 14573 14662 64.000 good r 1 12395 12526 12386 12526 72.000 good [End exons] [End grail2exons_human_1.3] ############################################################################################################################################################## RESULTATS DE PROGRAMA GENEMARK AMB LA SEQÜÈNCIA SENSE EMMASCARAR: GeneMark Version 2.4 (Reload this page) Reference:Borodovsky M. and McIninch J. GeneMark: parallel gene recognition for both DNA strands, Computers & Chemistry, 1993, Vol. 17, No. 19, pp. 123-133. ------------------------------------------------------------------------ Result of last submittal GeneMark Results *Go to list of predicted ORFs Sequence: Thu Feb 28 09:10:19 EST 2002 Sequence length: 148061 GC Content: 42.55% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: H. sapiens, 0.00 < GC < 0.46 - Order 4 Matrix author: JDM Matrix order: 4 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 4824 4997 direct fr 3 0.52 0.15 4920 4997 direct fr 3 0.51 0.17 23922 24020 complement fr 2 0.58 0.89 53922 54035 direct fr 3 0.52 0.73 53940 54035 direct fr 3 0.50 0.83 73606 73659 complement fr 3 0.50 0.56 74443 74748 direct fr 1 0.70 0.02 74473 74748 direct fr 1 0.67 0.30 74524 74748 direct fr 1 0.62 0.47 84353 84490 direct fr 2 0.50 0.23 84631 84669 direct fr 1 0.59 0.15 88078 88185 direct fr 1 0.59 0.07 88111 88185 direct fr 1 0.61 0.28 89407 89562 direct fr 1 0.60 0.08 89410 89562 direct fr 1 0.60 0.22 89416 89562 direct fr 1 0.60 0.10 98151 98321 direct fr 3 0.52 0.61 98166 98321 direct fr 3 0.55 0.57 98205 98321 direct fr 3 0.52 0.55 101244 101369 complement fr 2 0.54 0.50 101244 101357 complement fr 2 0.53 0.72 104457 104540 complement fr 2 0.51 0.92 106206 106400 direct fr 3 0.58 0.32 106224 106400 direct fr 3 0.61 0.53 106287 106400 direct fr 3 0.64 0.17 106302 106400 direct fr 3 0.60 0.24 106317 106400 direct fr 3 0.56 0.27 108424 108567 complement fr 3 0.61 0.64 ------------------------------------------------------------------------ Input Sequence Title (optional):[Image] Sequence Text:[Image] Sequence File upload:[Image] Running Options Species:[Image] Window size:[Image] bp RBS model:[Image] Step size:[Image] bp Use alternate genetic code:[Image] Threshold:[Image] % Eukaryote (e.g. Yeast, ATG = only start) Mycoplasma (TGA = Tryptophan) Output Options Graphical output options[Image] Text output options[Image] Generate PostScript graphics List open reading frames (ORFs) Mark orfs on graph predicted as coding sequences (CDSs) Mark regions on graph List regions of interest Mark stop codons on graph List putative eukaryotic splice Mark start codons on graph sites Mark frameshifts on graph Write protein translations of ORFs Mark putative exon splice sites Write nucleotide transcripts of ORFs Print graph in landscape format Write protein translations of Email address (required for graphical regions output) Write nucleotide transcripts of regions Write protein translations of putative exons Write nucleotide transcripts of putative exons Run ------------------------------------------------------------------------ Web pages maintained by GeneMark administrator, genemark-admin@amber.biology.gatech.edu. Please send any suggestions for improvements or problems to the web page maintainer. RESULTATS DE PROGRAMA GENEMARK AMB LA SEQÜÈNCIA EMMASCARADA: GeneMark Version 2.4 (Reload this page) Reference:Borodovsky M. and McIninch J. GeneMark: parallel gene recognition for both DNA strands, Computers & Chemistry, 1993, Vol. 17, No. 19, pp. 123-133. ------------------------------------------------------------------------ Result of last submittal GeneMark Results *Go to list of predicted ORFs Sequence: Thu Feb 28 11:18:49 EST 2002 Sequence length: 148061 GC Content: 62.40% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: H. sapiens, 0.58 < GC < 1.00 - Order 4 Matrix order: 4 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 55605 55772 complement fr 2 0.62 0.86 62690 62743 complement fr 1 0.56 0.91 62690 62734 complement fr 1 0.69 0.23 62690 62731 complement fr 1 0.69 0.24 62690 62728 complement fr 1 0.69 0.33 ------------------------------------------------------------------------ Input Sequence Title (optional):[Image] Sequence Text:[Image] Sequence File upload:[Image] Running Options Species:[Image] Window size:[Image] bp RBS model:[Image] Step size:[Image] bp Use alternate genetic code:[Image] Threshold:[Image] % Eukaryote (e.g. Yeast, ATG = only start) Mycoplasma (TGA = Tryptophan) Output Options Graphical output options[Image] Text output options[Image] Generate PostScript graphics List open reading frames (ORFs) Mark orfs on graph predicted as coding sequences (CDSs) Mark regions on graph List regions of interest Mark stop codons on graph List putative eukaryotic splice Mark start codons on graph sites Mark frameshifts on graph Write protein translations of ORFs Mark putative exon splice sites Write nucleotide transcripts of ORFs Print graph in landscape format Write protein translations of Email address (required for graphical regions output) Write nucleotide transcripts of regions Write protein translations of putative exons Write nucleotide transcripts of putative exons Run ------------------------------------------------------------------------ Web pages maintained by GeneMark administrator, genemark-admin@amber.biology.gatech.edu. Please send any suggestions for improvements or problems to the web page maintainer.