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Your ClustalW Results:

                     Use JalView:

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Pairwise Scores:

 CLUSTAL W (1.81) Multiple Sequence Alignments

Sequence format is Pearson
Sequence 1: AI218948patro13prima      491 bp
Sequence 2: AU138240patro15prima      783 bp
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score:  98
Guide tree        file created:   [/net/nfs0/vol1/production/w3nobody/tmp/810956.42826-51948.dnd]
Start of Multiple Alignment
There are 1 groups
Aligning...
Group 1: Sequences:   2      Score:9178
Alignment Score 3801
CLUSTAL-Alignment file created  [/net/nfs0/vol1/production/w3nobody/tmp/810956.42826-51948.aln]

Your Multiple Sequence Alignment:

810956.42826-51948.aln

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CLUSTAL W (1.81) multiple sequence alignment

AI218948patro13prima      ------------------------------------------------------------
AU138240patro15prima      ATATTTTGCACATGAGTTCAGAGGAAGAGGAAGTGTAGCCGGCGGACGCGCGGCGGCGGC 60


AI218948patro13prima      ------------------------------------------------------------
AU138240patro15prima      GGCGGGGGCGCGTCGGGGCTGGAGCCGGAGCGCGCCGGGCGCTGGGCGCAGCGAGCGAGA 120


AI218948patro13prima      -----------------------GAGGGACAGACGCACCGATCGCCGGAGGGACAGACAC 37
AU138240patro15prima      GCGCGGCGGCCGCGGGCTCCGGCGAGGGACAGACGCACCGATCGCCGGAGGGACAGACAC 180
                                                 *************************************

AI218948patro13prima      ACGACCACGCGGCGCCACCGCCCACGCCTCCACCCACCGGCGCCCAAGTCCTCCCCGCGC 97
AU138240patro15prima      ACGACCACGCGGCGCCACCGCCCACGCCTCCACCCACCGGCGCCCAAGTCCTCCCCGCGC 240
                          ************************************************************

AI218948patro13prima      CGCCTCCTCTGTATGGCACAAACTTTCCTCCCGGGACGGAACACGCTGCCTCAGGGAGCC 157
AU138240patro15prima      CGCCTCCTCTGTATGGCACAAACTTTCCTCCCGGGACGGAACACGCTGCCTCAGGGAGCC 300
                          ************************************************************

AI218948patro13prima      CGCGACCGCGCCTTCTCCTCCGCCGGTCCCATACGCTGCTGAAATGGGTTGCGGATTGAA 217
AU138240patro15prima      CGCGACCGCGCCTTCTCCTCCGCCGGTCCCATACGCTGCTGAAATGGGTTGCGGATTGAA 360
                          ************************************************************

AI218948patro13prima      CAAGTTAGAGAAACGTGATGAAAAACGGCCTGGGAATATTTATTCAACTTTGAAGAGGCC 277
AU138240patro15prima      CAAGTTAGAGAAACGTGATGAAAAACGGCCTGGGAATATTTATTCAACTTTGAAGAGGCC 420
                          ************************************************************

AI218948patro13prima      TCAGGTGGAAACCAAGATAGATGTGTCCTATGAATACCGCTTCCTGGAGTTCACGACTCT 337
AU138240patro15prima      TCAGGTGGAAACCAAGATAGATGTGTCCTATGAATACCGCTTCCTGGAGTTCACGACTCT 480
                          ************************************************************

AI218948patro13prima      GAGTGCTGCGGAGCTCCCTGGGTCCTCA-GCAGTGAGGCTGGCCTCCCTGCGTGACCTGC 396
AU138240patro15prima      GAGTGCTGCGGAGCTCCCTGGGTCCTCAAGCAGTGAGGCTGGCCTCCCTGCGTGACCTGC 540
                          **************************** *******************************

AI218948patro13prima      CCGCCCAGCTCCTGGAGCTGTACCAGCAGGGCTTCTCGCTGGCGGGCCTGCACCCCTTCG 456
AU138240patro15prima      CCGCCCAGCTCCTGGAGCTGTACCAGCAGGGCTTCTCGCTGGCGGCCCTGCACCCCTTCG 600
                          ********************************************* **************

AI218948patro13prima      TGCAGGCCACCCATGAGCGGNAGAAAGACGCCCTG------------------------- 491
AU138240patro15prima      TGCAGCCCACCCATGAGCGGGAGAAGACGCCCCTGGAGCACATCTTTAGAGNCATCCTGA 660
                          ***** ************** ****     *****

AI218948patro13prima      ------------------------------------------------------------
AU138240patro15prima      TCAAGAAAACCGACAGATCTCAGAAAACTGATCTTCACAAATGAAGGGTACATCTNGGNA 720


AI218948patro13prima      ------------------------------------------------------------
AU138240patro15prima      TTAGATTGCTGTTCCTCCTTAGACCACCCGACAAGACCAGAAANTCATCCCAGAGTTCAT 780


AI218948patro13prima      ---
AU138240patro15prima      TAA 783


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Your guide tree:

810956.42826-51948.dnd

(AI218948patro13prima:0.00611,AU138240patro15prima:0.00611);
  ------------------------------------------------------------------------