Blast 2 Sequences results




BLAST 2 SEQUENCES RESULTS VERSION BLASTN 2.2.2 [Dec-14-2001] 

Match: Mismatch: gap open: gap extension:  
x_dropoff:  expect: wordsize:  Filter  

 Sequence 1
            lcl|AC090953
                          Length
                                 189955
                                        (1 .. 189955)
 Sequence 2
            gi 14249885
                          Length
                                 939
                                        (1 .. 939)

NOTE:The statistics (bitscore and expect value) is calculated based on the size of nr database

NOTE:If protein translation is reversed, please repeat the search with reverse strand of the query sequence

Score =  469 bits (244), Expect = e-127
Identities = 244/244 (100%)
 Strand = Plus / Plus


                                                                     
Query: 177658 gtgtacacttgactgtgaagtggctgtgagagtgggtggagagttcttctttgaccctca 177717
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432    gtgtacacttgactgtgaagtggctgtgagagtgggtggagagttcttctttgaccctca 491

                                                                          
Query: 177718 gcctgcggatgcctctagaaacctcgtgttgattgcaggaggagtcggaattaaccctct 177777
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492    gcctgcggatgcctctagaaacctcgtgttgattgcaggaggagtcggaattaaccctct 551

                                                                          
Query: 177778 gctttccatcctgcggcacgcagcagatctcctcagagagcaggcaaacaaaagaaatgg 177837
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552    gctttccatcctgcggcacgcagcagatctcctcagagagcaggcaaacaaaagaaatgg 611

                                                                          
Query: 177838 atatgagataggaacaataaaactattctacagtgcaaaaaataccagcgaactcctgtt 177897
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612    atatgagataggaacaataaaactattctacagtgcaaaaaataccagcgaactcctgtt 671

                  
Query: 177898 taag 177901
              ||||
Sbjct: 672    taag 675

Score =  300 bits (156), Expect = 3e-76
Identities = 156/156 (100%)
 Strand = Plus / Plus




                                                                          
Query: 179440 gaaggaagaataacggagaaggagataagagatcatatttcaaaagagactttgttctat 179499
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784    gaaggaagaataacggagaaggagataagagatcatatttcaaaagagactttgttctat 843

                                                                          
Query: 179500 atttgtggcccacctccaatgacagactttttctccaagcaactggaaaacaaccatgta 179559
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844    atttgtggcccacctccaatgacagactttttctccaagcaactggaaaacaaccatgta 903

                                                  
Query: 179560 cccaaagaacacatttgctttgagaagtggtggtag 179595
              ||||||||||||||||||||||||||||||||||||
Sbjct: 904    cccaaagaacacatttgctttgagaagtggtggtag 939

Score =  275 bits (143), Expect = 1e-68
Identities = 143/143 (100%)
 Strand = Plus / Plus




                                                                          
Query: 170888 gggttgatttctttattccaggagtctctgtggttggtgggttttcaatatgctccagtc 170947
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290    gggttgatttctttattccaggagtctctgtggttggtgggttttcaatatgctccagtc 349

                                                                          
Query: 170948 ccagactgctagaacaagagagagtgatagaattggcagtgaaatatacgaaccaccctc 171007
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350    ccagactgctagaacaagagagagtgatagaattggcagtgaaatatacgaaccaccctc 409

                                     
Query: 171008 ctgccctctgggttcacaatacg 171030
              |||||||||||||||||||||||
Sbjct: 410    ctgccctctgggttcacaatacg 432

Score =  229 bits (119), Expect = 8e-55
Identities = 119/119 (100%)
 Strand = Plus / Plus




                                                                          
Query: 146986 atggcctgtgctgctgttatgattcctgggttgttgcggtgctctgttggagccatccgt 147045
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1      atggcctgtgctgctgttatgattcctgggttgttgcggtgctctgttggagccatccgt 60

                                                                         
Query: 147046 attgaggctgcgtcactgagattgacactcagcactttgcgccaccttactctaaccag 147104
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61     attgaggctgcgtcactgagattgacactcagcactttgcgccaccttactctaaccag 119

Score =  214 bits (111), Expect = 3e-50
Identities = 111/111 (100%)
 Strand = Plus / Plus




                                                                          
Query: 178671 agaaaaatatccttgatttagtaaatgaatttcctgagaagattgcatgcagtttgcatg 178730
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674    agaaaaatatccttgatttagtaaatgaatttcctgagaagattgcatgcagtttgcatg 733

                                                                 
Query: 178731 ttacaaaacagactacacaaatcaatgcggaactcaagccatacatcacgg 178781
              |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734    ttacaaaacagactacacaaatcaatgcggaactcaagccatacatcacgg 784

Score =  212 bits (110), Expect = 1e-49
Identities = 110/110 (100%)
 Strand = Plus / Plus




                                                                          
Query: 162373 agattgtgtcagcagctaaggtgtgtggagctgccagtgagtcaccgtcagtgaagagcc 162432
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182    agattgtgtcagcagctaaggtgtgtggagctgccagtgagtcaccgtcagtgaagagcc 241

                                                                
Query: 162433 tccgcttgcttgttgctgatcaagacttttcctttaaagctggccagtgg 162482
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242    tccgcttgcttgttgctgatcaagacttttcctttaaagctggccagtgg 291

Score =  127 bits (66), Expect = 4e-24
Identities = 66/66 (100%)
 Strand = Plus / Plus




                                                                          
Query: 147690 agcataatgaaatccaaaaggaaaactgatcacatggagagaactgcaagtgtccttcga 147749
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118    agcataatgaaatccaaaaggaaaactgatcacatggagagaactgcaagtgtccttcga 177

                    
Query: 147750 cgggag 147755
              ||||||
Sbjct: 178    cgggag 183

CPU time:     3.38 user secs.       0.15 sys. secs          3.53 total secs.

Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.33    0.621     1.12 


Matrix: blastn matrix:1 -2
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93
Number of Sequences: 0
Number of extensions: 93
Number of successful extensions: 13
Number of sequences better than 10.0: 1
length of query: 189955
length of database: 5,006,917,935
effective HSP length: 30
effective length of query: 189925
effective length of database: 5,006,805,525
effective search space: 950917539335625
effective search space used: 950917539335625
T: 0
A: 30
X1: 6 (11.5 bits)
X2: 26 (50.0 bits)
S1: 12 (23.8 bits)
S2: 24 (46.8 bits)