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CLUSTAL W (1.81) Multiple Sequence Alignments Sequence format is Pearson Sequence 1: CDK2_HUMAN 298 aa Sequence 2: CDK1_HUMAN 297 aa Sequence 3: CDK3_HUMAN 305 aa Sequence 4: CDK4_HUMAN 303 aa Sequence 5: CDK5_HUMAN 292 aa Sequence 6: CDK6_HUMAN 326 aa Sequence 7: CDK7_HUMAN 346 aa Sequence 8: CDK8_HUMAN 464 aa Sequence 9: CDK9_HUMAN 372 aa Sequence 10: CDK10_HUMAN 360 aa Start of Pairwise alignments Aligning... Sequences (2:3) Aligned. Score: 64 Sequences (4:5) Aligned. Score: 44 Sequences (3:4) Aligned. Score: 45 Sequences (2:4) Aligned. Score: 43 Sequences (1:2) Aligned. Score: 65 Sequences (3:5) Aligned. Score: 61 Sequences (4:6) Aligned. Score: 68 Sequences (2:5) Aligned. Score: 56 Sequences (1:3) Aligned. Score: 75 Sequences (3:6) Aligned. Score: 46 Sequences (4:7) Aligned. Score: 36 Sequences (2:6) Aligned. Score: 46 Sequences (1:4) Aligned. Score: 44 Sequences (3:7) Aligned. Score: 44 Sequences (4:8) Aligned. Score: 36 Sequences (2:7) Aligned. Score: 42 Sequences (1:5) Aligned. Score: 59 Sequences (4:9) Aligned. Score: 34 Sequences (1:6) Aligned. Score: 48 Sequences (3:8) Aligned. Score: 39 Sequences (2:8) Aligned. Score: 38 Sequences (4:10) Aligned. Score: 40 Sequences (1:7) Aligned. Score: 44 Sequences (3:9) Aligned. Score: 39 Sequences (2:9) Aligned. Score: 40 Sequences (5:6) Aligned. Score: 46 Sequences (3:10) Aligned. Score: 42 Sequences (1:8) Aligned. Score: 37 Sequences (2:10) Aligned. Score: 40 Sequences (5:7) Aligned. Score: 45 Sequences (6:7) Aligned. Score: 33 Sequences (1:9) Aligned. Score: 40 Sequences (7:8) Aligned. Score: 34 Sequences (5:8) Aligned. Score: 36 Sequences (1:10) Aligned. Score: 43 Sequences (6:8) Aligned. Score: 30 Sequences (7:9) Aligned. Score: 35 Sequences (5:9) Aligned. Score: 41 Sequences (6:9) Aligned. Score: 33 Sequences (8:9) Aligned. Score: 29 Sequences (5:10) Aligned. Score: 43 Sequences (7:10) Aligned. Score: 36 Sequences (6:10) Aligned. Score: 35 Sequences (9:10) Aligned. Score: 34 Sequences (8:10) Aligned. Score: 32 Guide tree file created: [/net/nfs0/vol1/production/w3nobody/tmp/939305.808162-166018.dnd] Start of Multiple Alignment There are 9 groups Aligning... Group 1: Sequences: 2 Score:5763 Group 2: Sequences: 3 Score:5387 Group 3: Sequences: 4 Score:5055 Group 4: Sequences: 2 Score:5575 Group 5: Sequences: 6 Score:4388 Group 6: Sequences: 7 Score:4502 Group 7: Sequences: 8 Score:4454 Group 8: Sequences: 9 Score:4565 Group 9: Sequences: 10 Score:3534 Alignment Score 34354 CLUSTAL-Alignment file created [/net/nfs0/vol1/production/w3nobody/tmp/939305.808162-166018.aln]
CLUSTAL W (1.81) multiple sequence alignment CDK2_HUMAN -----------------------------------MENFQKVEKIGEGTYGVVYKARNKL 25 CDK3_HUMAN -----------------------------------MDMFQKVEKIGEGTYGVVYKAKNRE 25 CDK1_HUMAN -----------------------------------MEDYTKIEKIGEGTYGVVYKGRHKT 25 CDK5_HUMAN -----------------------------------MQKYEKLEKIGEGTYGTVFKAKNRE 25 CDK4_HUMAN ---------------------------------MATSRYEPVAEIGVGAYGTVYKARDPH 27 CDK6_HUMAN --------------------------MEKDGLCRADQQYECVAEIGEGAYGKVFKARDLK 34 CDK10_HUMAN MAEPDLECEQIRLKCIRKEGFFTVPPEHRLGRCRSVKEFEKLNRIGEGTYGIVYRARDTQ 60 CDK9_HUMAN --------------------MAKQYDSVECPFCDEVSKYEKLAKIGQGTFGEVFKARHRK 40 CDK7_HUMAN ---------------------------MALDVKSRAKRYEKLDFLGEGQFATVYKARDKN 33 CDK8_HUMAN -----------------MDYDFKVKLSSERERVEDLFEYEG-CKVGRGTYGHVYKAKRKD 42 : :* * :. *::.: CDK2_HUMAN TG--EVVALKKIRLDTET---EGVPSTAIREISLLKELN---HPNIVKLLDVIHT----- 72 CDK3_HUMAN TG--QLVALKKIRLDLEM---EGVPSTAIREISLLKELK---HPNIVRLLDVVHN----- 72 CDK1_HUMAN TG--QVVAMKKIRLESEE---EGVPSTAIREISLLKELR---HPNIVSLQDVLMQ----- 72 CDK5_HUMAN TH--EIVALKRVRLDDDD---EGVPSSALREICLLKELK---HKNIVRLHDVLHS----- 72 CDK4_HUMAN SG--HFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRT-- 83 CDK6_HUMAN NGG-RFVALKRVRVQTGE---EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT-- 88 CDK10_HUMAN TD--EIVALKKVRMDKEK---DGIPISSLREITLLLRLR---HPNIVELKEVVVG----- 107 CDK9_HUMAN TG--QKVALKKVLMENEK---EGFPITALREIKILQLLK---HENVVNLIEICRTKASPY 92 CDK7_HUMAN TN--QIVAIKKIKLGHRSEAKDGINRTALREIKLLQELS---HPNIIGLLDAFGH----- 83 CDK8_HUMAN GKDDKDYALKQIEG-------TGISMSACREIALLRELK---HPNVISLQKVFLS----- 87 . *:* : *. :: **: :* * * *:: * . CDK2_HUMAN ---ENKLYLVFEFLHQDLKKFMDASA-------LTGIPLPLIKSYLFQLLQGLAFCHSHR 122 CDK3_HUMAN ---ERKLYLVFEFLSQDLKKYMDSTP-------GSELPLHLIKSYLFQLLQGVSFCHSHR 122 CDK1_HUMAN ---DSRLYLIFEFLSMDLKKYLDSIPP------GQYMDSSLVKSYLYQILQGIVFCHSRR 123 CDK5_HUMAN ---DKKLTLVFEFCDQDLKKYFDSCN--------GDLDPEIVKSFLFQLLKGLGFCHSRN 121 CDK4_HUMAN -DREIKVTLVFEHVDQDLRTYLDKAP-------PPGLPAETIKDLMRQFLRGLDFLHANC 135 CDK6_HUMAN -DRETKLTLVFEHVDQDLTTYLDKVP-------EPGVPTETIKDMMFQLLRGLDFLHSHR 140 CDK10_HUMAN -NHLESIFLVMGYCEQDLASLLENMP--------TPFSEAQVKCIVLQVLRGLQYLHRNF 158 CDK9_HUMAN NRCKGSIYLVFDFCEHDLAGLLSNVL--------VKFTLSEIKRVMQMLLNGLYYIHRNK 144 CDK7_HUMAN ---KSNISLVFDFMETDLEVIIKDNS--------LVLTPSHIKAYMLMTLQGLEYLHQHW 132 CDK8_HUMAN -HADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW 146 : *:: . ** :. . :* : * *: : * . CDK2_HUMAN VLHRDLKPQNLLIN----TEGAIKLADFGLARAFGVPVR----TYTHEVVTLWYRAPEIL 174 CDK3_HUMAN VIHRDLKPQNLLIN----ELGAIKLADFGLARAFGVPLR----TYTHEVVTLWYRAPEIL 174 CDK1_HUMAN VLHRDLKPQNLLID----DKGTIKLADFGLARAFGIPIR----VYTHEVVTLWYRSPEVL 175 CDK5_HUMAN VLHRDLKPQNLLIN----RNGELKLADFGLARAFGIPVR----CYSAEVVTLWYRPPDVL 173 CDK4_HUMAN IVHRDLKPENILVT----SGGTVKLADFGLARIYSYQM-----ALTPVVVTLWYRAPEVL 186 CDK6_HUMAN VVHRDLKPQNILVT----SSGQIKLADFGLARIYSFQM-----ALTSVVVTLWYRAPEVL 191 CDK10_HUMAN IIHRDLKVSNLLMT----DKGCVKTADFGLARAYGVPVK----PMTPKVVTLWYRAPELL 210 CDK9_HUMAN ILHRDMKAANVLIT----RDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELL 200 CDK7_HUMAN ILHRDLKPNNLLLD----ENGVLKLADFGLAKSFGSPNR----AYTHQVVTRWYRAPELL 184 CDK8_HUMAN VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKP-LADLDPVVVTFWYRAPELL 205 ::***:* *:*: * :* **:*:*: :. *** ***.*::* CDK2_HUMAN LGCKYYSTAVDIWSLGCIFAEMVTR-RALFPGDSE---------IDQLFRIFRTLGTPDE 224 CDK3_HUMAN LGSKFYTTAVDIWSIGCIFAEMVTR-KALFPGDSE---------IDQLFRIFRMLGTPSE 224 CDK1_HUMAN LGSARYSTPVDIWSIGTIFAELATK-KPLFHGDSE---------IDQLFRIFRALGTPNN 225 CDK5_HUMAN FGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV---------DDQLKRIFRLLGTPTE 224 CDK4_HUMAN LQST-YATPVDMWSVGCIFAEMFRR-KPLFCGNSE---------ADQLGKIFDLIGLPPE 235 CDK6_HUMAN LQSS-YATPVDLWSVGCIFAEMFRR-KPLFRGSSD---------VDQLGKILDVIGLPGE 240 CDK10_HUMAN LGTTTQTTSIDMWAVGCILAELLAH-RPLLPGTSE---------IHQIDLIVQLLGTPSE 260 CDK9_HUMAN LGERDYGPPIDLWGAGCIMAEMWTR-SPIMQGNTE---------QHQLALISQLCGSITP 250 CDK7_HUMAN FGARMYGVGVDMWAVGCILAELLLR-VPFLPGDSD---------LDQLTRIFETLGTPTE 234 CDK8_HUMAN LGARHYTKAIDIWAIGCIFAELLTS-EPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPAD 264 : :*:*. * *:**: .:: .*: * * CDK2_HUMAN VVWPGVTSMPDYKPSFPKWARQ-DFSKVVPPLDED--------GRSLLSQMLHYDPNKRI 275 CDK3_HUMAN DTWPGVTQLPDYKGSFPKWTRK-GLEEIVPNLEPE--------GRDLLMQLLQYDPSQRI 275 CDK1_HUMAN EVWPEVESLQDYKNTFPKWKPG-SLASHVKNLDEN--------GLDLLSKMLIYDPAKRI 276 CDK5_HUMAN EQWPSMTKLPDYKP-YPMYPATTSLVNVVPKLNAT--------GRDLLQNLLKCNPVQRI 275 CDK4_HUMAN DDWPRDVSLP--RGAFPPRGPR-PVQSVVPEMEES--------GAQLLLEMLTFNPHKRI 284 CDK6_HUMAN EDWPRDVALP--RQAFHSKSAQ-PIEKFVTDIDEL--------GKDLLLKCLTFNPAKRI 289 CDK10_HUMAN NIWPGFSKLPLVGQYSLRKQPYNNLKHKFPWLSEA--------GLRLLHFLFMYDPKKRA 312 CDK9_HUMAN EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDP------YALDLIDKLLVLDPAQRI 304 CDK7_HUMAN EQWPDMCSLP--DYVTFKSFPGIPLHHIFSAAGDD--------LLDLIQGLFLFNPCARI 284 CDK8_HUMAN KDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRI 324 * . *: : :* * CDK2_HUMAN SAKAALAHPFFQDVTKPVPHLRL------------------------------------- 298 CDK3_HUMAN TAKTALAHPYFSSP-EPSPAARQY----------VLQRFRH------------------- 305 CDK1_HUMAN SGKMALNHPYFNDLDNQIKKM--------------------------------------- 297 CDK5_HUMAN SAEEALQHPYFSDFCPP------------------------------------------- 292 CDK4_HUMAN SAFRALQHSYLHKDEGNPE----------------------------------------- 303 CDK6_HUMAN SAYSALSHPYFQDLERCKENLDSH----------LPPSQNTSELNTA------------- 326 CDK10_HUMAN TAGDCLESSYFKEKPLPCEPELMP----------TFPHHRNKRAAPATSEGQSKRCKP-- 360 CDK9_HUMAN DSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNPATTN 364 CDK7_HUMAN TATQALKMKYFSNRPGPTPGCQLPRP--------NCPVETLKEQSNPALAIKRKRTEALE 336 CDK8_HUMAN TSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKKNQQQQQGNNHTNG 384 . .: :: . CDK2_HUMAN ------------------------------------------------------------ CDK3_HUMAN ------------------------------------------------------------ CDK1_HUMAN ------------------------------------------------------------ CDK5_HUMAN ------------------------------------------------------------ CDK4_HUMAN ------------------------------------------------------------ CDK6_HUMAN ------------------------------------------------------------ CDK10_HUMAN ------------------------------------------------------------ CDK9_HUMAN QTEFERVF---------------------------------------------------- 372 CDK7_HUMAN QGGLPKKLIF-------------------------------------------------- 346 CDK8_HUMAN TGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYPNPGPSTSQPQSS 444 CDK2_HUMAN -------------------- CDK3_HUMAN -------------------- CDK1_HUMAN -------------------- CDK5_HUMAN -------------------- CDK4_HUMAN -------------------- CDK6_HUMAN -------------------- CDK10_HUMAN -------------------- CDK9_HUMAN -------------------- CDK7_HUMAN -------------------- CDK8_HUMAN MGYSATSQQPPQYSHQTHRY 464
( ( ( ( ( CDK2_HUMAN:0.12481, CDK3_HUMAN:0.12351) :0.04142, CDK1_HUMAN:0.18291) :0.03693, CDK5_HUMAN:0.20407) :0.03374, ( CDK4_HUMAN:0.15061, CDK6_HUMAN:0.15962) :0.14838) :0.01186, ( ( CDK7_HUMAN:0.30313, CDK8_HUMAN:0.35294) :0.00818, CDK9_HUMAN:0.33684) :0.00406, CDK10_HUMAN:0.31276);