Your ClustalW Results:
Pairwise Scores:
CLUSTAL W (1.81) Multiple Sequence Alignments
Sequence format is Pearson
Sequence 1: var1NM_001798 2328 bp
Sequence 2: var2NM_052827 2226 bp
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score: 99
Guide tree file created: [/net/nfs0/vol1/production/w3nobody/tmp/101668.70641-230929.dnd]
Start of Multiple Alignment
There are 1 groups
Aligning...
Group 1: Sequences: 2 Score:41547
Alignment Score 15821
CLUSTAL-Alignment file created [/net/nfs0/vol1/production/w3nobody/tmp/101668.70641-230929.aln]
Your Multiple Sequence Alignment:
101668.70641-230929.aln
CLUSTAL W (1.81) multiple sequence alignment
var1NM_001798 GGAAGCAGGGCGGGGCCTCTGGTGGCGGTCGGGAACTCGGTGGGAGGCGGCAACATTGTT 60
var2NM_052827 GGAAGCAGGGCGGGGCCTCTGGTGGCGGTCGGGAACTCGGTGGGAGGCGGCAACATTGTT 60
************************************************************
var1NM_001798 TCAAGTTGGCCAAATTGACAAGAGCGAGAGGTATACTGCGTTCCATCCCGACCCGGGGCC 120
var2NM_052827 TCAAGTTGGCCAAATTGACAAGAGCGAGAGGTATACTGCGTTCCATCCCGACCCGGGGCC 120
************************************************************
var1NM_001798 ACGGTACTGGGCCCTGTTTCCCCCTCCTCGGCCCCCGAGAGCCAGGGTCCGCCTTCTGCA 180
var2NM_052827 ACGGTACTGGGCCCTGTTTCCCCCTCCTCGGCCCCCGAGAGCCAGGGTCCGCCTTCTGCA 180
************************************************************
var1NM_001798 GGGTTCCCAGGCCCCCGCTCCAGGGCCGGGCTGACCCGACTCGCTGGCGCTTCATGGAGA 240
var2NM_052827 GGGTTCCCAGGCCCCCGCTCCAGGGCCGGGCTGACCCGACTCGCTGGCGCTTCATGGAGA 240
************************************************************
var1NM_001798 ACTTCCAAAAGGTGGAAAAGATCGGAGAGGGCACGTACGGAGTTGTGTACAAAGCCAGAA 300
var2NM_052827 ACTTCCAAAAGGTGGAAAAGATCGGAGAGGGCACGTACGGAGTTGTGTACAAAGCCAGAA 300
************************************************************
var1NM_001798 ACAAGTTGACGGGAGAGGTGGTGGCGCTTAAGAAAATCCGCCTGGACACTGAGACTGAGG 360
var2NM_052827 ACAAGTTGACGGGAGAGGTGGTGGCGCTTAAGAAAATCCGCCTGGACACTGAGACTGAGG 360
************************************************************
var1NM_001798 GTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCTTAAGGAGCTTAACCATCCTAATA 420
var2NM_052827 GTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCTTAAGGAGCTTAACCATCCTAATA 420
************************************************************
var1NM_001798 TTGTCAAGCTGCTGGATGTCATTCACACAGAAAATAAACTCTACCTGGTTTTTGAATTTC 480
var2NM_052827 TTGTCAAGCTGCTGGATGTCATTCACACAGAAAATAAACTCTACCTGGTTTTTGAATTTC 480
************************************************************
var1NM_001798 TGCACCAAGATCTCAAGAAATTCATGGATGCCTCTGCTCTCACTGGCATTCCTCTTCCCC 540
var2NM_052827 TGCACCAAGATCTCAAGAAATTCATGGATGCCTCTGCTCTCACTGGCATTCCTCTTCCCC 540
************************************************************
var1NM_001798 TCATCAAGAGCTATCTGTTCCAGCTGCTCCAGGGCCTAGCTTTCTGCCATTCTCATCGGG 600
var2NM_052827 TCATCAAGAGCTATCTGTTCCAGCTGCTCCAGGGCCTAGCTTTCTGCCATTCTCATCGGG 600
************************************************************
var1NM_001798 TCCTCCACCGAGACCTTAAACCTCAGAATCTGCTTATTAACACAGAGGGGGCCATCAAGC 660
var2NM_052827 TCCTCCACCGAGACCTTAAACCTCAGAATCTGCTTATTAACACAGAGGGGGCCATCAAGC 660
************************************************************
var1NM_001798 TAGCAGACTTTGGACTAGCCAGAGCTTTTGGAGTCCCTGTTCGTACTTACACCCATGAGG 720
var2NM_052827 TAGCAGACTTTGGACTAGCCAGAGCTTTTGGAGTCCCTGTTCGTACTTACACCCATGAGG 720
************************************************************
var1NM_001798 TGGTGACCCTGTGGTACCGAGCTCCTGAAATCCTCCTGGGCTGCAAATATTATTCCACAG 780
var2NM_052827 TG---------------------------------------------------------- 722
**
var1NM_001798 CTGTGGACATCTGGAGCCTGGGCTGCATCTTTGCTGAGATGGTGACTCGCCGGGCCCTAT 840
var2NM_052827 --------------------------------------------ACTCGCCGGGCCCTAT 738
****************
var1NM_001798 TCCCTGGAGATTCTGAGATTGACCAGCTCTTCCGGATCTTTCGGACTCTGGGGACCCCAG 900
var2NM_052827 TCCCTGGAGATTCTGAGATTGACCAGCTCTTCCGGATCTTTCGGACTCTGGGGACCCCAG 798
************************************************************
var1NM_001798 ATGAGGTGGTGTGGCCAGGAGTTACTTCTATGCCTGATTACAAGCCAAGTTTCCCCAAGT 960
var2NM_052827 ATGAGGTGGTGTGGCCAGGAGTTACTTCTATGCCTGATTACAAGCCAAGTTTCCCCAAGT 858
************************************************************
var1NM_001798 GGGCCCGGCAAGATTTTAGTAAAGTTGTACCTCCCCTGGATGAAGATGGACGGAGCTTGT 1020
var2NM_052827 GGGCCCGGCAAGATTTTAGTAAAGTTGTACCTCCCCTGGATGAAGATGGACGGAGCTTGT 918
************************************************************
var1NM_001798 TATCGCAAATGCTGCACTACGACCCTAACAAGCGGATTTCGGCCAAGGCAGCCCTGGCTC 1080
var2NM_052827 TATCGCAAATGCTGCACTACGACCCTTACAAGAGGATTTCGGCCAAGGCAGCCCTGGCTC 978
************************** ***** ***************************
var1NM_001798 ACCCTTTCTTCCAGGATGTGACCAAGCCAGTACCCCATCTTCGACTCTGATAGCCTTCTT 1140
var2NM_052827 ACCCTTTCTTCCAGGATGTGACCAAGCCAGTACCCCATCTTCGACTCTGATAGCCTTCTT 1038
************************************************************
var1NM_001798 GAAGCCCCCAGCCCTAATCTCACCCTCTCCTCCAGTGTGGGCTTGACCAGGCTTGGCCTT 1200
var2NM_052827 GAAGCCCCCAGCCCTAATCTCACCCTCTCCTCCAGTGTGGGCTTGACCAGGCTTGGCCTT 1098
************************************************************
var1NM_001798 GGGCTATTTGGACTCAGGTGGGCCCTCTGAACTTGCCTTAAACACTCACCTTCTAGTCTT 1260
var2NM_052827 GGGCTATTTGGACTCAGGTGGGCCCTCTGAACTTGCCTTAAACACTCACCTTCTAGTCTT 1158
************************************************************
var1NM_001798 GGCCAGCCAACTCTGGGAATACAGGGGTGAAAGGGGGGAACCAGTGAAAATGAAAGGAAG 1320
var2NM_052827 GGCCAGCCAACTCTGGGAATACAGGGGTGAAAGGGGGGAACCAGTGAAAATGAAAGGAAG 1218
************************************************************
var1NM_001798 TTTCAGTATTAGATGCACTTAAGTTAGCCTCCACCACCCTTTCCCCCTTCTCTTAGTTAT 1380
var2NM_052827 TTTCAGTATTAGATGCACTTAAGTTAGCCTCCACCACCCTTTCCCCCTTCTCTTAGTTAT 1278
************************************************************
var1NM_001798 TGCTGAAGAGGGTTGGTATAAAAATAATTTTAAAAAAGCCTTCCTACACGTTAGATTTGC 1440
var2NM_052827 TGCTGAAGAGGGTTGGTATAAAAATAATTTTAAAAAAGCCTTCCTACACGTTAGATTTGC 1338
************************************************************
var1NM_001798 CGTACCAATCTCTGAATGCCCCATAATTATTATTTCCAGTGTTTGGGATGACCAGGATCC 1500
var2NM_052827 CGTACCAATCTCTGAATGCCCCATAATTATTATTTCCAGTGTTTGGGATGACCAGGATCC 1398
************************************************************
var1NM_001798 CAAGCCTCCTGCTGCCACAATGTTTATAAAGGCCAAATGATAGCGGGGGCTAAGTTGGTG 1560
var2NM_052827 CAAGCCTCCTGCTGCCACAATGTTTATAAAGGCCAAATGATAGCGGGGGCTAAGTTGGTG 1458
************************************************************
var1NM_001798 CTTTTGAGAACCAAGTAAAACAAAACCACTGGGAGGAGTCTATTTTAAAGAATTCGGTTG 1620
var2NM_052827 CTTTTGAGAACCAAGTAAAACAAAACCACTGGGAGGAGTCTATTTTAAAGAATTCGGTTG 1518
************************************************************
var1NM_001798 AAAAAATAGATCCAATCAGTTTATACCCTAGTTAGTGTTTTGCCTCACCTAATAGGCTGG 1680
var2NM_052827 AAAAAATAGATCCAATCAGTTTATACCCTAGTTAGTGTTTTGCCTCACCTAATAGGCTGG 1578
************************************************************
var1NM_001798 GAGACTGAAGACTCAGCCCGGGTGGGGCTGCAGAAAAATGATTGGCCCCAGTCCCCTTGT 1740
var2NM_052827 GAGACTGAAGACTCAGCCCGGGTGGGGCTGCAGAAAAATGATTGGCCCCAGTCCCCTTGT 1638
************************************************************
var1NM_001798 TTGTCCCTTCTACAGGCATGAGGAATCTGGGAGGCCCTGAGACAGGGATTGTGCTTCATT 1800
var2NM_052827 TTGTCCCTTCTACAGGCATGAGGAATCTGGGAGGCCCTGAGACAGGGATTGTGCTTCATT 1698
************************************************************
var1NM_001798 CCAATCTATTGCTTCACCATGGCCTTATGAGGCAGGTGAGAGATGTTTGAATTTTTCTCT 1860
var2NM_052827 CCAATCTATTGCTTCACCATGGCCTTATGAGGCAGGTGAGAGATGTTTGAATTTTTCTCT 1758
************************************************************
var1NM_001798 TCCTTTTAGTATTCTTAGTTGTTCAGTTGCCAAGGATCCCTGATCCCATTTTCCTCTGAC 1920
var2NM_052827 TCCTTTTAGTATTCTTAGTTGTTCAGTTGCCAAGGATCCCTGATCCCATTTTCCTCTGAC 1818
************************************************************
var1NM_001798 GTCCACCTCCTACCCCATAGGAGTTAGAAGTTAGGGTTTAGGCATCATTTTGAGAATGCT 1980
var2NM_052827 GTCCACCTCCTACCCCATAGGAGTTAGAAGTTAGGGTTTAGGCATCATTTTGAGAATGCT 1878
************************************************************
var1NM_001798 GACACTTTTTCAGGGCTGTGATTGAGTGAGGGCATGGGTAAAAATATTTCTTTAAAAGAA 2040
var2NM_052827 GACACTTTTTCAGGGCTGTGATTGAGTGAGGGCATGGGTAAAAATATTTCTTTAAAAGAA 1938
************************************************************
var1NM_001798 GGATGAACAATTATATTTATATTTCAGGTTATATCCAATAGTAGAGTTGGCTTTTTTTTT 2100
var2NM_052827 GGATGAACAATTATATTTATATTTCAGGTTATATCCAATAGTAGAGTTGGCTTTTTTTTT 1998
************************************************************
var1NM_001798 TTTTTTTTTGGTCATAGTGGGTGGATTTGTTGCCATGTGCACCTTGGGGTTTTGTAATGA 2160
var2NM_052827 TTTTTTTTTGGTCATAGTGGGTGGATTTGTTGCCATGTGCACCTTGGGGTTTTGTAATGA 2058
************************************************************
var1NM_001798 CAGTGCTAAAAAAAAAAAAGCATTTTTTTTTATGATTTGTCTCTGTCACCCTTGTCCTTG 2220
var2NM_052827 CAGTGCTAAAAAAAAAAAAGCATTTTTTTTTATGATTTGTCTCTGTCACCCTTGTCCTTG 2118
************************************************************
var1NM_001798 AGTGCTCTTGCTATTAACGTTATTTGTAATTTAGTTTGTAGCTCATTAAAAAAATGTGCC 2280
var2NM_052827 AGTGCTCTTGCTATTAACGTTATTTGTAATTTAGTTTGTAGCTCATTAAAAAAATGTGCC 2178
************************************************************
var1NM_001798 TAGTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2328
var2NM_052827 TAGTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2226
************************************************
Your guide tree:
101668.70641-230929.dnd
(var1NM_001798:0.00045,var2NM_052827:0.00045);