Your ClustalW Results:
Pairwise Scores:
CLUSTAL W (1.81) Multiple Sequence Alignments
Sequence format is Pearson
Sequence 1: BOVINE 424 aa
Sequence 2: MURINE 434 aa
Sequence 3: INFLUENZA 654 aa
Sequence 4: RAT 439 aa
Sequence 5: PUFFINOSIS 439 aa
Sequence 6: BREDA 416 aa
Sequence 7: BERNE 142 aa
Sequence 8: TOROVIRUS 416 aa
Sequence 9: CORONAVIRUS 424 aa
Sequence 10: MURINE2 97 aa
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score: 56
Sequences (4:5) Aligned. Score: 85
Sequences (2:3) Aligned. Score: 18
Sequences (3:4) Aligned. Score: 18
Sequences (1:3) Aligned. Score: 20
Sequences (4:6) Aligned. Score: 27
Sequences (4:7) Aligned. Score: 27
Sequences (2:4) Aligned. Score: 90
Sequences (3:5) Aligned. Score: 18
Sequences (1:4) Aligned. Score: 59
Sequences (4:8) Aligned. Score: 22
Sequences (3:6) Aligned. Score: 27
Sequences (2:5) Aligned. Score: 85
Sequences (3:7) Aligned. Score: 25
Sequences (1:5) Aligned. Score: 58
Sequences (4:9) Aligned. Score: 59
Sequences (4:10) Aligned. Score: 72
Sequences (2:6) Aligned. Score: 23
Sequences (3:8) Aligned. Score: 21
Sequences (2:7) Aligned. Score: 26
Sequences (1:6) Aligned. Score: 28
Sequences (1:7) Aligned. Score: 27
Sequences (5:6) Aligned. Score: 28
Sequences (3:9) Aligned. Score: 20
Sequences (2:8) Aligned. Score: 22
Sequences (5:7) Aligned. Score: 25
Sequences (3:10) Aligned. Score: 7
Sequences (6:7) Aligned. Score: 73
Sequences (1:8) Aligned. Score: 23
Sequences (2:9) Aligned. Score: 56
Sequences (5:8) Aligned. Score: 22
Sequences (2:10) Aligned. Score: 72
Sequences (6:8) Aligned. Score: 76
Sequences (7:8) Aligned. Score: 87
Sequences (1:9) Aligned. Score: 95
Sequences (7:9) Aligned. Score: 28
Sequences (7:10) Aligned. Score: 4
Sequences (1:10) Aligned. Score: 57
Sequences (9:10) Aligned. Score: 62
Sequences (5:9) Aligned. Score: 58
Sequences (5:10) Aligned. Score: 69
Sequences (6:9) Aligned. Score: 27
Sequences (6:10) Aligned. Score: 26
Sequences (8:9) Aligned. Score: 25
Sequences (8:10) Aligned. Score: 17
Guide tree file created: [/net/nfs0/vol1/production/w3nobody/tmp/511511.157466-152331.dnd]
Start of Multiple Alignment
There are 9 groups
Aligning...
Group 1: Sequences: 2 Score:9177
Group 2: Sequences: 2 Score:9179
Group 3: Sequences: 3 Score:9025
Group 4: Sequences: 4 Score:1881
Group 5: Sequences: 6 Score:5413
Group 6: Sequences: 2 Score:2896
Group 7: Sequences: 3 Score:5399
Group 8: Sequences: 9 Score:2003
Group 9: Delayed
Sequence:3 Score:2732
Alignment Score 33127
CLUSTAL-Alignment file created [/net/nfs0/vol1/production/w3nobody/tmp/511511.157466-152331.aln]
Your Multiple Sequence Alignment:
511511.157466-152331.aln
CLUSTAL W (1.81) multiple sequence alignment
BOVINE ---------MFLLPR--FVLVSCIIGSLGFDNPPTNVVSHLNGDWFLFGDSRSDCNHVVN 49
CORONAVIRUS ---------MFLLPR--FILVSCIIGSLGFYNPPTNVVSHVNGDWFLFGDSRSDCNHIVN 49
MURINE ----MGCMCIAMAPRTLLLLIGCQL-VFGF-NEPLNIVSHLNDDWFLFGDSRSDCTYVEN 54
RAT ----MGRMCIAMAPRTLLLLIGCQL-VFGF-NEPINIVSHLNDDWFLFGDSRSDCTYVEN 54
PUFFINOSIS ----MGSMCIAMAPRTLLLLIGCQL-ALGF-NEPLNVVSHLSDDWFLFGDSRSDCSYVEN 54
MURINE2 -------MCMAMAPRTLLLLIGCQL-VFGF-NEPLNTVSHSNDDWFLFGDSRSDCNHISS 51
BERNE ------------------------------------------------------------
TOROVIRUS --------------MLSLILFFPSFAFAVTPVTPYFGPLYITFNCCLFGDSRSDCTKVQS 46
BREDA --------------MLSLILFFPSFAFAATPVTPYYGPGHITFDWCGFGDSRSDCTNPQS 46
INFLUENZA MFFSLLLMLGLTEAEKIKICLQKQVNSSFSLHNGFGGNLYATEEKRMFELVKPKAGASVL 60
BOVINE TNPRNYSYMDLNPA------------LCDSGKISSKAGNSIFRSFHFTD-----FYNYTG 92
CORONAVIRUS INPHNYSYMDLNPV------------LCDSGKISSKAGNSIFRSFHFTD-----FYNYTG 92
MURINE NGHPKLDWLDLDPK------------LCNSGRIYAKSGNSLFRSFHFID-----FYNYSG 97
RAT NGHPKLDWLDLDPK------------LCNSGKIAAKSGNSLFRSFHFTD-----FYNYTG 97
PUFFINOSIS NGHPAFDWLDLPQE------------LCHSGKISAKSGNSLFKSFHFTD-----WYNYTG 97
MURINE2 LSQQNYKYMDINPE------------LCKSGKISSKAGNSLFRSFHFTD-----FYNYSG 94
BERNE ------------------------------------------------------------
TOROVIRUS PMS-----LDNPQN------------FCP--NFSLKSSSSMFFSIHYNNHSSLVLFDNFN 87
BREDA PMS-----LDIPQQ------------LCP--KFSSKSSSSMFLSLHWNNHSSFVSYDYFN 87
INFLUENZA NQSTWIGFGDSRTDQSNSAFPRSLMSAKTADKFRSLSGGSLMLSMFGPPGK--VDYLYQG 118
BOVINE EGQQIIFYEGINFTPYHAFKCTTSGSNDIWMQNKGLFYTQVYKNMAVYRSLTFVNVPYVY 152
CORONAVIRUS EGQQIIFYEGVNFTPYHAFKCNRSGSNDIWMQNKGLFYTQVYKNMAVYRSLTFVNVPYVY 152
MURINE EGDQVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVSYAY 157
RAT EGDQIIFYEGVSFSPSHGFKCLVEGDNNKWMGNKARFYALLYKKMAQYRSLSFVTVPYAY 157
PUFFINOSIS EGDQVIFYEGVNFSPSHGFKCLAEGDNKRWMGNKARFYALVYKKMAYYRSLSFVNVSYSY 157
MURINE2 EGS--------------------------------------------------------- 97
BERNE ------------------------------------------------------------
TOROVIRUS CRIEKVYYNGVNLSPRNQYSCYDEG-VDSYMELKTSFNIKLNQMATILRCIKLIQLKARS 146
BREDA CGVEKVFYEGVNFSPRKQYSCWDEG-VDGWIELKTRFYTKLYQMATTSRCIKLIQLQAPS 146
INFLUENZA CGKHKVFYEGVNWSPHAAIDCYRKN----WTDIKLNFQKSIYELASQSHCMSLVNALDKT 174
BOVINE NGSAQSTALCK--------SGSLVLNNPAYIAREANF-GDYYYKVEADFYLSGCDEYIVP 203
CORONAVIRUS NGSAQSTALCK--------SGSLVLNNPAYIAPQANS-GDYYYKVEADFYLSGCDEYIVP 203
MURINE GGNAKPTSICK--------DKTLTLNNPTFISKESNY-VDYYYESEANFTLQGCDEFIVT 208
RAT GGNAKPTSICK--------DKTLTLNNPTFISKESNY-VDYYYVSEANFTLQGCDEFIVP 208
PUFFINOSIS GGKAKPTAICK--------DNTLTLNNPTFISKESNY-VDYYYESDANFTLEGCDEFIVP 208
MURINE2 ------------------------------------------------------------
BERNE ------------------------------------------------------------
TOROVIRUS SFTTLQDVVCR--------TNKYLPNNPTFALLSDTVPTWVQFVLPDLSGKTICIKYLVP 198
BREDA SLPTLQAGVCR--------TNKQLPDNPRLALLSDTVPTSVQFVLPGSSGTTICTKHLVP 198
INFLUENZA IPLQVTKGVAKNCNNSFLKNPALYTQEVKPLEQICGEENLAFFTLPTQFGTYECKLHLVA 234
BOVINE LCIFNG---KFLSN-----TKYYDDSQYYFNKDTGVIYGLNSTETIT-----TGFDFNCH 250
CORONAVIRUS LCIFNG---KFLSN-----TKYYDDSQYYFNKDTGVIYGLNSTETIT-----TGFDLNCY 250
MURINE LCVSNG---HSKSSSSDPANKYYTDAQSYYNMDTGVLYGFNSTLDVGNTVQNPGLDLTCR 265
RAT LCVFNG---HSRGSSSDPANKYYTDSQSYYNIDTGVLYGFNSTLDVGNTAQNPGLDLTCM 265
PUFFINOSIS LCVFNG---HSRGSSSDPANKYYMDSQMYYNMDTGVFYGFNSTLDVGNTAQNPGLDLTCI 265
MURINE2 ------------------------------------------------------------
BERNE ------------------------------------------------------------
TOROVIRUS FCHLNHGCFTAGSSCPPFGVSYVSDSFNYGFNDATPYIGLA-----------ESHDNVCD 247
BREDA FCYLNHGCFTTGGSCLPFGVSYVSDSFYYGYYDATPQIGST-----------ESHDYVCD 247
INFLUENZA SCYFIYD-----SKEVYNKRGCGNYFQVIYDSSGKVVGGLDNRVSPYTGNSGDTPTMQCD 289
BOVINE YLVLPSGNYLAISNELLLTVPTKAICLNKRKDFTPVQVVDSRWNNARQSDNMTAVACQ-P 309
CORONAVIRUS YLVLPSGNYLAISNELLLTVPTKAICLNKRKDFTPVQVVDSRWNNARQSDNMTAVACQ-P 309
MURINE YLALTPGNYKAVSLEYLLSLPSKAICLRKPKSFMPVQVVDSRWNSTRQSDNMTAVACQ-L 324
RAT YLVLTPGNYKAVSLEYLLTIPSKAICLRKPKRFMPVQVVDSRWNSTRQSDNMTAVACQ-L 324
PUFFINOSIS YYALTPGNYKAVSLEYLLTIPSKAICLRKPKRFMPVQVVDSRWNNAKHSDNMTAVACQ-T 324
MURINE2 ------------------------------------------------------------
BERNE -----------------------------MNFTVPVQAIQSIWSVGKESDDAIAEACK-P 30
TOROVIRUS YLFVEAGTHNASIVGNFLFYPTKSYCFNTMNFTVPVQAIQSIWSEGNESDDAIAEACK-P 306
BREDA YLFMEPGTYNASTVGKFLVYPTKSYCMDTMNITVPVQAVQSIWSEQYASDDAIGQACK-A 306
INFLUENZA MLQLKPGRYSVRSSPRFLLMPERSYCFD-MKEKGPVTAVQSIWGKGRKSDYAVDQACLST 348
BOVINE PYCYFRNSTTNYVG--VYDINHGDAGFTSILSGLLYDSPCFSQQGVFRYDN-VSSVWPLY 366
CORONAVIRUS PYCYFRNSTTNYVG--VYDINHGDAGFTSILSGLLYNSPCFSQQGVFRYDN-VSSVWPLY 366
MURINE PYCFFRNTSADYSGG-THDVHHGDFHFRQLLSGLLYNVSCIAQQGAFVYNN-VSSSWPAY 382
RAT PYCFFRNTSADYSGD-THDVHHGDFYFRQLLSGLLYNVSCIAQQGAFLYNN-VSSIWPVY 382
PUFFINOSIS PYCLFRNTSSGYNGS-THDVHHGGFHFRKLLSGLLYNVSCIAQQGAFFYNN-VSSQWPVL 382
MURINE2 ------------------------------------------------------------
BERNE PFCIYFSKKTPYTVTNGSNADHGDDEVRQMMRGLLYNSSCISAQGHTPLAL-YSTAMLYP 89
TOROVIRUS PFCIYYSKTTPYTVTNGSNADHRDDEVRMMVRGLLYNSSCISAQGSTPLAL-YSTAMLYA 365
BREDA PYCIFYNKTTPYTVTNGSDANHGDDEVRMMMQGLLRNSSCISPQGSTPLAL-YSTEMIYE 365
INFLUENZA PGCMLIQKQKPYIG--EADDHHGDQEMRELLSGLDYEARCISQSGWVNETSPFTEEYLLP 406
BOVINE P-YGRCPTAA------DINTPDVPICVYDPLPIILLGILLGVAVIIIVVLLLYFMVDNGT 419
CORONAVIRUS P-YGRCPTAA------DINNPDLPICVYDPLPVILLGILLGVAVIIIVVLLLYFMVDNGT 419
MURINE G-YGHCPTAA------NIG-YMAPVCIYEPLPVILLGVLLGIAVLIIVFLMFYFMTDSGV 434
RAT G-YGHCPTAA------NIG-YMAPVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSV 434
PUFFINOSIS G-YGQCPTAA------NIE-FIAPVCLYDPLPVILLGVLLGIAVLIIVFLLFYFMTDSGV 434
MURINE2 ------------------------------------------------------------
BERNE PMYGSCPQYV------KLFDGSGS----ESVDVISSSYFVATWVLLVVVIILVFIIISFC 139
TOROVIRUS PIYGSCPQYV------KLFDTSGS----ESVDVISSSYFVATWVLLVVVVILIFVIISFF 415
BREDA PNYGSCPQFY------KLFDTSGN----ENIDVISSSYFVATWVLLVVVVILIFVIISFF 415
INFLUENZA PKFGRCPLAAKEESIPKIPDGLLIPTSGTDTTVTKPKSRIFGIDDLIIGLLFVAIVEAGI 466
BOVINE RLHDA------------------------------------------------------- 424
CORONAVIRUS RLHDA------------------------------------------------------- 424
MURINE ------------------------------------------------------------
RAT RLHEA------------------------------------------------------- 439
PUFFINOSIS RLHEA------------------------------------------------------- 439
MURINE2 ------------------------------------------------------------
BERNE ISN--------------------------------------------------------- 142
TOROVIRUS C----------------------------------------------------------- 416
BREDA C----------------------------------------------------------- 416
INFLUENZA GGYLLGSRKESGGGVTKESAEKGFEKIGNDIQILRSSTNIAIEKLNDRISHDEQAIRDLT 526
BOVINE ------------------------------------------------------------
CORONAVIRUS ------------------------------------------------------------
MURINE ------------------------------------------------------------
RAT ------------------------------------------------------------
PUFFINOSIS ------------------------------------------------------------
MURINE2 ------------------------------------------------------------
BERNE ------------------------------------------------------------
TOROVIRUS ------------------------------------------------------------
BREDA ------------------------------------------------------------
INFLUENZA LEIENARSEALLGELGIIRALLVGNISIGLQESLWELASEITNRAGDLAVEVSPGCWIID 586
BOVINE ------------------------------------------------------------
CORONAVIRUS ------------------------------------------------------------
MURINE ------------------------------------------------------------
RAT ------------------------------------------------------------
PUFFINOSIS ------------------------------------------------------------
MURINE2 ------------------------------------------------------------
BERNE ------------------------------------------------------------
TOROVIRUS ------------------------------------------------------------
BREDA ------------------------------------------------------------
INFLUENZA NNICDQSCQNFIFKFNETAPVPTIPPLDTKIDLQSDPFYWGSSLGLAITAANLMAALVIS 646
BOVINE --------
CORONAVIRUS --------
MURINE --------
RAT --------
PUFFINOSIS --------
MURINE2 --------
BERNE --------
TOROVIRUS --------
BREDA --------
INFLUENZA GIAICRTK 654
Your guide tree:
511511.157466-152331.dnd
(
(
(
(
BOVINE:0.02874,
CORONAVIRUS:0.01607)
:0.16378,
(
INFLUENZA:0.41115,
(
BREDA:0.10571,
(
BERNE:0.06009,
TOROVIRUS:0.06667)
:0.08371)
:0.20736)
:0.20437)
:0.09018,
MURINE2:0.16169)
:0.05584,
(
MURINE:0.05139,
RAT:0.04308)
:0.01952,
PUFFINOSIS:0.07989);